Fig. 2

Prevalence of enteropathogens in stool samples from 718 children hospitalised at KCH at different PCR cycle threshold (Ct) cut-offs. The bars represent organism type and include 95% confidence interval errors bars for the proportions. Panel (a) prevalence of the detected enteropathogens when applying a Ct cut-off of ≤ 40 to define positives. Panel (b) prevalence of the detected enteropathogens when applying a Ct cut-off ≤ 35 to define positives. Panel (c) prevalence of detected the enteropathogens when applying a Ct cut-off ≤ 30 to define positives