Fig. 5

Microbiome composition at family level in neonatal mice analyzed using the WGS dataset, classified with Ganon and adapted from Grimer. The data were stratified by treatment group and time points (Stratum V is missing due to mislabeling during the wet lab process). The x-axis displays treatment groups (anti, antibiotics only; antiprob, antibiotics with probiotics; none, no treatment; and prob, probiotics only), specific antibiotic exposure (I = Ampicillin/Gentamicin + Infloran, II = Infloran, III = Meropenem/Vancomycin+ Infloran, IV = Ampicillin/Gentamicin, VI = Meropenem /Vancomycin, VII = None (PBS oral)), and additional information (sampling day | sample ID - sample number - sampling day). Each bar corresponds to an individual sample and the y-axis indicates the percentage of reads that mapped specified taxa