Table 1 Genome characteristics of C. perfringens FMT 1006 (PRJEB79013) and of strains from different isolation sources. CDS: coding regions. ATCC 13,124 (GCA_000013285); Str. 13 (GCA_000009685.1); SM101 (GCA_000013845); JP55 (GCA_001579765.1); FORC_003 (GCA_001304735.1); NCTC 2837 (GCA_900478015.1). Genome assembled were obtained from NCBI, annotations were performed following the same pipeline as for FMT 1006
| Â | C. perfringens strain | ||||||
|---|---|---|---|---|---|---|---|
FMT 1006 | ATCC 13124 | str. 13 | SM101 | JP55 | FORC_003 | NCTC 2837 | |
Accession number | PRJEB79013 | GCA_000013285 | GCA_000009685.1 | GCA_000013845 | GCA_001579765.1 | GCA_001304735.1 | GCA_900478015.1 |
Origin | Infant feces | Bovine | Soil isolate | Boiled salt beef and beans | Equine | Aquarium water | Unknown |
Genome size (Mbp) | 3.2 | 3.3 | 3.1 | 3.0 | 3.6 | 3.4 | 3.3 |
GC content (%) | 28.5 | 28.5 | 28.5 | 28.2 | 28.2 | 28.4 | 28.4 |
Number of contigs | 1 | 1 | 2 | 1 | 6 | 2 | 1 |
Protein-coding genes | 2774 | 2876 | 2659 | 2578 | 3234 | 2928 | 2887 |
rRNA | 30 | 23 | 30 | 30 | 30 | 30 | 30 |
tRNA genes | 94 | 93 | 96 | 94 | 95 | 96 | 96 |
N50 (Mbp) | 3.2 | 3.3 | 3.0 | 2.9 | 3.3 | 3.3 | 3.3 |
Completeness (%) | 99.4 | 97.9 | 97.33 | 99.89 | 100 | 99.99 | 99.99 |
Contamination (%) | 0.00 | 0.95 | 0.43 | 0.5 | 0.13 | 1.82 | 0.06 |
Coverage fold (x) | 99 | Â | 9.1 | 9.4 | 100 | 207 | 258 |
Alpha toxin | + | + | + | + | + | + | + |
Reference | This article | [13] | [65] | [13] | [66] | Not published | [67] |